Publications
  1. [http://www.pnas.org/content/early/2012/12/26/1207025110.full.pdf+html] Traverse, C.C., L.M. Mayo Smith, S.R. Poltak, and V.S. Cooper.* Tangled bank of experimentally evolved Burkholderia biofilms reflects selection during chronic infections. PNAS, epub ahead of print.
  2. [http://gbe.oxfordjournals.org/content/4/12/1256.full] Morrow, J.D. and V.S. Cooper*. 2012. Evolutionary effects of translocations in bacterial genomes. Gen. Biol. Evol. 4 (12): 1256-1262.
  3. [http://aem.asm.org/content/78/10/3778.long] Ellis CN, Schuster BM, Striplin MJ, Jones SH, Whistler CA, Cooper VS. 2012. Influence of Seasonality on the Genetic Diversity of Vibrio parahaemolyticus in New Hampshire Shellfish Waters as Determined by Multilocus Sequence Analysis. Appl Environ Microbiol. 2012 May;78(10):3778-82. Epub 2012 Mar 9.
  4. [http://aem.asm.org/content/77/21/7568] Schuster, B.M., A.L. Tyzik, R.A. Donner, M.J. Striplin, S. Almagro-Moreno, S.H. Jones, V.S. Cooper, and C.E. Whistler. 2011. Ecology and genetic structure of a northern temperate population of Vibrio cholerae with close relatives to toxigenic isolates. Appl. Env. Micro 77(21):7568-75.
  5. [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3100764/] Abebe, E, F. Abebe-Akele, J. Morrison, V.S. Cooper, and W.K. Thomas. 2011. An insect pathogenic symbiosis between a Caenorhabditis and Serratia. Virulence 2:2, 1-4; March/April 2011
  6. [http://gbe.oxfordjournals.org/content/2/859] Flynn, K.M, S.H. Vohr, P.J. Hatcher and V.S. Cooper*. 2010. Evolutionary rates and gene dispensability associate with replication timing in the archaeon Sulfolobus islandicus. Genome Biology and Evolution doi: 10.1093/gbe/evq068
  7. (link) Jones, S., M. Striplin, J. Mahoney, V.S. Cooper and C.E. Whistler. 2010. Incidence and abundance of pathogenic Vibrio species in the Great Bay Estuary, New Hampshire, pp. 127-134, In, Proceedings of the Seventh International Conference on Molluscan Shellfish Safety. Lassus, P. (Ed.). Nantes, France, June 14-19, 2009. Quae Publishing, Versailles, France.
  8. [http://www.springerlink.com/content/l05141232472726g/] Schuster, B.M., V.S. Cooper, and C.E. Whistler. 2010. Breaking the language barrier: Experimental evolution of non-symbiotic Vibrio fischeri in squid tailors luminescence to the host. Symbiosis, in press.
  9. [http://www.nature.com/doifinder/10.1038/ismej.2010.136] Poltak, S.R. and V.S. Cooper. 2010. Ecological succession of long-term evolved biofilm populations produces synergistic communities. ISME journal
  10. [http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1000732] Cooper, V.S, S. Vohr, S.C. Wrocklage, and P.J. Hatcher. 2010. Why genes evolve faster on secondary chromosomes in bacteria. PLoS Computational Biology.
  11. [http://www.ncbi.nlm.nih.gov/pubmed/20154121] Ellis, C.E. and V.S. Cooper. 2010 Experimental adaptation of Burkholderia cenocepacia to onion medium compromises host range. Applied and Environmental Microbiology
  12. Cooper, V.S., W.A. Carlson, and J.J. LiPuma. 2009. Susceptibility of Caenorhabditis elegans to Burkholderia infection depends on prior diet and secreted bacterial attractants. PLoS ONE 4(11): e7961. doi:10.1371/journal.pone.0007961
  13. Cooper, V.S. 2007. Experimental evolution of pathogens. In: Encyclopedia of Infectious Disease, Michel Tibayrenc, editor. Wiley, New York.
  14. Cooper, V. S. 2006. The study of microbial adaptation by long-term experimental evolution. In: The Evolution of Microbial Pathogens, Hank Seifert and Victor DiRita, editors. ASM Press.
  15. Cooper, V.S. and J.J. LiPuma. 2005. Liquid C. elegans culture for the study of Burkholderia pathogenesis. 10th Annual Meeting, International Burkholderia cepacia Working Group. Oklahoma City, OK.
  16. Cooper, V.S., E. O. Romero, and J.J. LiPuma. VNTR-based typing of Burkholderia cenocepacia. 9th Annual Meeting, International Burkholderia cepacia Working Group. 2004. Vancouver, B.C..
  17. Cooper, V. S. Long-term experimental evolution in Escherichia coli. 2002. X. Quantifying the fundamental and realized niche. BMC Evolutionary Biology 2(12):1-9.
  18. Cooper, V. S., M. H. Reiskind, J. A. Miller, K. A. Shelton, B. A. Walther, J. S. Elkinton, and P. W. Ewald. 2002. Timing of transmission and the evolution of virulence of an insect virus. Proc. Roy Soc. Lond. B, 269:1161-1165.
  19. Cooper, V. S., A. F. Bennett and R. E. Lenski. 2001. Evolution of thermal performance of Escherichia coli populations during 20,000 generations in a constant environment. Evolution 55(5):889-896.
  20. Cooper, V. S., D. Schneider, M. Blot, and R. E. Lenski. 2001. Mechanisms causing rapid and parallel losses of ribose catabolism in evolving populations of E. coli B. J. Bacteriology 183: 2834–2841.
  21. Riley, M. S., V. S. Cooper, R. E. Lenski, L. J. Forney and T. L. Marsh. 2001. Rapid phenotypic radiation of a soil bacterium maintained for 1000 generations in a laboratory environment. Microbiology (UK) 147: 995-1006.
  22. Cooper, V. S. and R. E. Lenski. 2000. The population genetics of ecological specialization in evolving Escherichia coli populations. Nature 407:736-739.
  23. Turner, P. E., V. S. Cooper, & R. E. Lenski. 1998. Tradeoff between horizontal and vertical modes of transmission in bacterial plasmids. Evolution 52(2): 315-329.
  24. Elena, S. F., V. S. Cooper, R. E. Lenski. 1996. Mechanisms of punctuated evolution (technical comment). Science 274:1748-1750.
  25. Elena, S. F., V. S. Cooper, R. E. Lenski. 1996. Punctuated evolution caused by selection of rare beneficial mutations. Science 272:1802-1804.
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